WebMar 4, 2024 · We present a correlation-driven molecular dynamics (CDMD) method for automated refinement of atomistic models into cryo-electron microscopy (cryo-EM) maps at resolutions ranging from near-atomic to subnanometer. http://biophysics.fsu.edu/soma/wp-content/uploads/sites/13/2015/10/s2015-Phenix_Tutorial.pdf
Assembly mechanism and cryoEM structure of RecA …
WebApr 4, 2024 · MicroED is a cryo-electron microscopy (cryo-EM) method, which has been developed during the last decade 7 ... Atomic models were refined with electron scattering factors in Phenix Refine 33 using automated solvent modeling. Several rounds of refinement resulted in a R work /R free of 0.19/0.22. In addition to the protein with the … WebElectron cryomicroscopy (cryo-EM) has advanced quickly in recent years, which has led to an increased number of atomic structures. Several tools for the analysis and validation of cryo-EM data and models have been developed within the Phenix software package, such as the refinement program phenix.real_space_refine. To understand the quality of ... schema theory meaning
RCSB PDB - 8F25: Cryo-EM structure of Lumazine synthase …
Webジャーナル: Nat Struct Mol Biol / 年: 2024 タイトル: Cryo-EM structure of SARS-CoV-2 ORF3a in lipid nanodiscs. 著者: David M Kern / Ben Sorum / Sonali S Mali / Christopher M Hoel / Savitha Sridharan / Jonathan P Remis / Daniel B Toso / Abhay Kotecha / Diana M Bautista / Stephen G Brohawn / 要旨: SARS-CoV-2 ORF3a is a putative viral ion channel … WebNov 7, 2024 · Cryo-EM structure of Lumazine synthase nanoparticle linked to VP8* antigen. ... MODEL REFINEMENT: PHENIX: Structure Validation. View Full Validation Report. View more in-depth experimental data. Entry History & Funding Information. Deposition Data. Released Date: 2024-04-12 ; Webphenix.refine and phenix.model_vs_data use the same code to perform the bulk solvent correction and scaling, so they should report approximately the same R-factors given … rusty spotted cat adult size